国立遺伝学研究所:藤 英博
原著論文 Original Research Papers
- Uehara, R., Au Yeung, W.K., Toriyama, K., Ohishi, H., Kubo, N., Toh, H., Suetake, I., Shirane, K. & Sasaki, H.
- The DNMT3A ADD domain is required for efficient de novo DNA methylation and maternal imprinting in mouse oocytes.
- PLoS Genet. 19:e1010855 (2023)
- Pubmed
- Maruyama, O., Li, Y., Toh, H., Au Yeung, W.K. & Sasaki, H
- CMIC: Predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers.
- BMC Bioinform. 23:371 (2022).
- Pubmed
- Kibe, K., Shirane, K., Ohishi, H., Uemura, S., Toh, H. & Sasaki, H.
- The DNMT3A PWWP domain is essential for the normal DNA methylation landscape in mouse somatic cells and oocytes.
- PLoS Genet. 17, e1009570 (2021)
- PubMed
- Hiramoto, T., Tahara, M., Liao, J., Soda, Y., Miura, Y., Kurita, R., Hamana, H., Inoue K., Kohara, H., Hijikata, Y., Okano, S., Yamaguchi, Y., Oda, Y., Ichiyanagi, K., Toh, H., Sasaki, H., Kishi, H., Ryo, A., Muraguchi, A., Takeda, M. & Tani, K.
- Non-transmissible MV vector with segmented RNA genome establishes different types of iPSCs from hematopoietic cells.
- Mol. Ther. 28, 129-141 (2020)
- PubMed
- Yamanaka, S., Nishihara, H., Toh, H., Nagai, L.A.E., Hashimoto, K., Park, S.J., Shibuya, A., Suzuki, A.M., Tanaka, Y., Nakai, K., Carninci, P., Sasaki, H. & Siomi, H.
- Broad heterochromatic domains open in gonocyte development prior to de novo DNA methylation.
- Dev. Cell 51, 21-34 (2019)
- PubMed
- Kanatsu-Shinohara, M., Yamamoto, T., Toh, H., Kazuki, Y., Imoto, J., Ikeo, K., Oshima, M., Shirahige, K., Iwama, A., Nabeshima, Y., Sasaki, H. & Shinohara, T.
- Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation.
- Proc. Natl. Acad. Sci. USA 116, 16404-16409 (2019)
- PubMed
- Nguyen, T.T.T., Oshima, K., Toh, H., Khasnobish, A., Fujii, Y., Arakawa, K. & Morita, H.
- Draft genome sequence of Butyricimonas faecihominis 30A1, isolated from feces of a Japanese Alzheimer's disease patient.
- Microbiol. Resour. Announc. 8, e00462-19 (2019)
- PubMed
- Okae, H., Toh, H., Sato, T., Hiura, H., Takahashi, S., Shirane, K., Kabayama, Y., Suyama, M., Sasaki, H. & Arima, T.
- Derivation of human trophoblast stem cells.
- Cell Stem Cell 22, 50-63 (2018)
- PubMed
- Maenohara, S., Unoki, M., Toh, H., Ohishi, H., Sharif, J., Koseki, H. & Sasaki, H.
- Role of UHRF1 in de novo DNA methylation in oocytes and maintenance methylation in preimplantation embryos.
- PLoS Genet. 13, e1007042 (2017)
- PubMed
- Sukma, A., Toh, H., Nguyen, T.T.T., Fitria, N., Mimura, I., Kaneko, R., Arakawa, K. & Morita, H.
- Microbiota community structure in traditional fermented milk dadiah in Indonesia: Insights from high-throughput 16S rRNA gene sequencing.
- Milk Science International 71, 1-3 (2017)
- Toh, H., Matsubara, T., Tomida, S., Mimura, I., Arakawa, K., Kikusui, T. & Morita, H.
- Draft genome sequence of Bifidobacterium lemurum DSM 28807T isolated from the gastrointestinal tracts of ring-tailed lemurs (Lemur catta).
- Genome Announc. 5, e01656-16 (2017)
- PubMed
- Toh, H., Shirane, K., Miura, F., Kubo, N., Ichiyanagi, K., Hayashi, K., Saitou, M., Suyama, M., Ito, T. & Sasaki, H.
- Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
- BMC Genomics 18, 31 (2017)
- PubMed
- Kabayama, Y., Toh, H., Katanaya, A., Sakurai, T., Chuma, S., Kuramochi-Miyagawa, S., Saga, Y., Nakano, T. & Sasaki, H.
- Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes.
- Nucl. Acids Res. 45, 5387-5398 (2017)
- PubMed
- Fujii, Y., Toh, H., Matsubara, T., Tomida, S., Nguyen, C.T.K., Mimura, I., Nakamura, S. & Morita, H.
- Draft genome sequence of probiotic Lactobacillus acidophilus strain L-55 isolated from a healthy human gut.
- Genome Announc. 4, e01357-16 (2016)
- PubMed
- Hamada, H., Okae, H., Toh, H., Chiba, H., Hiura, H., Shirane, K., Sato, T., Suyama, M., Yaegashi, N., Sasaki, H. & Arima, T.
- Allele-specific methylome and transcriptome analysis reveals widespread imprinting in the human placenta.
- Am. J. Hum. Genet. 99, 1045-1058 (2016)
- PubMed
- Morita, H., Toh, H., Oshima, K., Nakano, A., Hano, C., Yoshida, S., Nguyen, T.T., Wulijideligen, Tashiro, K., Arakawa, K. & Miyamoto, T.
- Draft genome sequence of leuconostoc mesenteroides 406 isolated from the traditional fermented mare milk airag in Tuv Aimag, Mongolia.
- Genome Announc. 4, e00166-16 (2016)
- PubMed
- Morita, H., Toh, H., Oshima, K., Nakano, A., Hano, C., Yoshida, S., Bolormaa, T., Burenjargal, S., Nguyen, C.T., Tashiro, K., Arakawa, K. & Miyamoto, T.
- Draft genome sequence of leuconostoc mesenteroides 213M0, isolated from traditional fermented mare milk airag in Bulgan Aimag, Mongolia.
- Genome Announc. 4, e00178-16 (2016)
- PubMed
- Takagi, M., Nakano, A., Toh, H., Oshima, K., Arakawa, K., Nakajima, F., Tashiro, K., Kikusui, T., Yanagida, F. & Morita, H.
- Draft genome sequence of Streptococcus orisasini SH06 isolated from a healthy thoroughbred gastrointestinal tract.
- Genome Announc. 4, e01566-15 (2016)
- PubMed
- Toh, H., Nakano, A., Kim, C.N., Mimura, I., Arakawa, K., Tashiro, K., Kikusui, T. & Morita, H.
- Draft genome sequence of a coccoid Lactobacillus equigenerosi NRIC 0697T isolated from the gastrointestinal tract of healthy thoroughbreds.
- Genome Announc. 4, e01679-15 (2016)
- PubMed
- Toh, H., Yamazaki, Y., Tashiro, K., Kawarai, S., Oshima, K., A. Nakano, Kim, C.N., Mimura, I., Arakawa, K., Iriki, A., Kikusui, T. & Morita, H.
- Draft genome sequence of Bifidobacterium aesculapii DSM 26737T, isolated from feces of baby common marmoset.
- Genome Announc. 3, e01463-15 (2015)
- PubMed
- Toh, H., Morita, H., Tsuji, H., Iwashita, K., Goto, N., Nakayama, J., Sekine, M., Kato, Y., Suzuki, K. & Fujita, N.
- Complete genome sequence of Lactobacillus acetotolerans RIB 9124 (NBRC 13120) isolated from putrefied (hiochi) Japanese sake.
- J. Biotechnol. 214, 214-215 (2015)
- PubMed
- Morita, H., Toh, H.(co-first author), Oshima, K., Nakano, A., Kiuchi, M., Kuroyanagi, H., Arakawa, K., Suda, W., Honda, K. & Hattori, M.
- Complete genome sequence of Bifidobacterium angulatum JCM 7096T isolated from human feces.
- J. Biotechnol. 211, 10-11 (2015)
- PubMed
- Morita, H., Toh, H.(co-first author), Oshima, K., Nakano, A., Arakawa, K., Takayama, Y., Kurokawa, R., Takanashi, K., Honda, K. & Hattori, M.
- Complete genome sequence of Bifidobacterium pseudocatenulatum JCM 1200T isolated from infant feces.
- J. Biotechnol. 210, 68-69 (2015)
- PubMed
- Morita, H., Toh, H.(co-first author), Oshima, K., Nakano, A., Shindo, C., Komiya, K., Arakawa, K., Suda, W., K., Honda, K. & Hattori, M.
- Complete genome sequence of Bifidobacterium bifidum JCM 1255T isolated from feces of a breast-fed infant.
- J. Biotechnol. 210, 66-67 (2015)
- PubMed
- Morita, H., Toh, H.(co-first author), Oshima, K., Nakano, A., Yamashita, N., Iioka, E., Arakawa, K., Suda, W., K., Honda, K. & Hattori, M.
- Complete genome sequence of Bifidobacterium catenulatum JCM 1194T isolated from human feces.
- J. Biotechnol. 210, 25-26 (2015)
- PubMed
- Morita, H., Toh, H.(co-first author), Oshima, K., Nakano, A., Yamashita, N., Iioka, E., Arakawa, K., Suda, W., K., Honda, K. & Hattori, M.
- Complete genome sequence of Bifidobacterium breve JCM 1192T isolated from infant feces.
- J. Biotechnol. 210, 81-82 (2015)
- PubMed
- Kubo, N., Toh, H., Shirane, K., Shirakawa, T., Kobayashi, H., Sato, T., Sone, H., Sato, Y., Tomizawa, S., Tsurusaki, Y., Shibata, H., Saitsu, H., Suzuki, Y., Matumoto, N., Suyama, M., Kono, T., Ohbo, K. & Sasaki, H.
- DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis.
- BMC Genomics 16, 624 (2015)
- PubMed
- Oshima, K., Hayashi, J., Toh, H., Nakano, A., Omori, E., Hattori, Y., Morita, H., Honda, K. & Hattori, M.
- Complete genome sequence of Scardovia inopinata JCM 12537T, isolated from human dental caries.
- Genome Announc. 3, e00481-15 (2015)
- PubMed
- Oshima, K., Hayashi, J., Toh, H., Nakano, A., Shindo, C., Komiya, K., Morita, H., Honda, K. & Hattori, M.
- Complete genome sequence of Parascardovia denticolens JCM 12538T, isolated from human dental caries.
- Genome Announc. 3, e00485-15 (2015)
- PubMed
- Toh, H., Hayashi, J., Oshima, K., Nakano, A., Takayama, Y., Takanashi, K., Morita, H. & Hattori, M.
- Complete genome sequence of Bifidobacterium dentium strain JCM 1195T, isolated from human dental caries.
- Genome Announc. 3, e00284-15 (2015)
- PubMed
- Toh, H., Oshima, K., Nakano, A., Yamashita, N., Iioka, E., Kurokawa, R., Morita, H. & Hattori, M.
- Complete genome sequence of Bifidobacterium scardovii strain JCM 12489T, isolated from human blood.
- Genome Announc. 3, e00285-15 (2015)
- PubMed
- Oshima, K., Hisamatsu, S., Toh, H., Nakano, A., Kiuchi, M., Kuroyanagi, H., Morita, H. & Hattori, M.
- Complete genome sequence of Gardnerella vaginalis strain JCM 11026T, isolated from vaginal tracts of women.
- Genome Announc. 3, e00286-15 (2015)
- PubMed
- Morita, H., Toh, H.(co-first author), Nakano, A., Oshima, K., Takagi, M., Suda, W., Tanabe, S. & Hattori, M.
- Complete genome sequence of Bifidobacterium kashiwanohense JCM 15439T, isolated from feces from a healthy Japanese infant.
- Genome Announc. 3, e00255-15 (2015)
- PubMed
- Kosaka, T., Toh, H., Fujiyama, A., Sakaki, Y., Watanabe, K., Meng, X.Y., Hanada, S. & Toyoda, A.
- Physiological and genetic basis for self-aggregation of a thermophilic hydrogenotrophic methanogen, Methanothermobacter strain CaT2.
- Environ. Microbiol. Rep. 6, 268-277 (2014)
- PubMed
- Takahata, M., Toh, H., Nakano, A., Takagi, M., Murakami, M., Ishii, Y., Takizawa, T., Tanabe, S. & Morita, H.
- Complete sequence analysis of two cryptic plasmids from Bifidobacterium kashiwanohense JCM 15439 (type strain) isolated from healthy infant feces.
- Anim. Sci. J. 85, 158-163 (2014)
- PubMed
- Kato, K., Toh, H., Sakamoto, N., Mori, K., Tashiro, K., Hibi, N., Sonomoto, K. & Nakayama, J.
- Draft Genome Sequence of Lactobacillus namurensis Chizuka 01, Isolated from Nukadoko, a Pickling Bed of Fermented Rice Bran.
- Genome Announc. 2, e01263-13 (2014)
- PubMed
- Toh, H., Oshima, K., Nakano, A., Takahata, M., Murakami, M., Takaki, T., Nishiyama, H., Igimi, S., Hattori, M. & Morita, H.
- Genomic adaptation of the Lactobacillus casei group.
- PLoS One 8, e75073 (2013)
- PubMed
- Matsutani, M., Ogawa, M., Takaoka, N., Hanaoka, N., Toh, H., Yamashita, A., Oshima, K., Hirakawa, H., Kuhara, S., Suzuki, H., Hattori, M., Kishimoto, T., Ando, S., Azuma, Y. & Shirai, M.
- Complete genomic DNA sequence of the east asian spotted fever disease agent Rickettsia japonica.
- PLoS One 8, e71861 (2013)
- PubMed
- Toh, H., Oshima, K., Suzuki, T., Hattori, M. & Morita, H.
- Complete Genome Sequence of the Equol-Producing Bacterium Adlercreutzia equolifaciens DSM 19450T.
- Genome Announc. 1, e00742-13 (2013)
- PubMed
- Kosaka, T., Toh, H. & Toyoda, A.
- Complete Genome Sequence of a Thermophilic Hydrogenotrophic Methanogen, Methanothermobacter sp. Strain CaT2.
- Genome Announc. 1, e00672-13 (2013)
- PubMed
- Shirane, K., Toh, H., Kobayashi, H., Miura, F., Chiba, H., Ito, T., Kono, T. & Sasaki, H.
- Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases.
- PLoS Genet. 9, e1003439 (2013)
- PubMed
- Fukao, M., Oshima, K., Morita, H., Toh, H., Suda, W., Kim, SW., Suzuki, S., Yakabe, T., Hattori, M. & Yajima N.
- Genomic analysis by deep sequencing of the probiotic Lactobacillus brevis KB290 harboring nine plasmids reveals genomic stability.
- PLoS One. 8, e60521 (2013)
- PubMed
- Liu, Y., Toh, H., Sasaki, H., Zhang, X. & Cheng, X.
- An atomic model of ZFP57 recognition of CpG methylation within a specific DNA sequence.
- Genes Dev. 26, 2374-2379 (2012)
- PubMed
- Fukuda, S., Toh, H., Taylor, TD., Ohno, H. & Hattori, M.
- Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters.
- Gut Microbes 3, 449-454 (2012)
- PubMed
- Takeno, A., Okamoto, A., Tori, K., Oshima, K., Hirakawa, H,, Toh, H., Agata, N., Yamada, K., Ogasawara, N., Hayashi, T., Shimizu, T., Kuhara, S., Hattori, M. & Ohta, M.
- Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide.
- J. Bacteriol. 194, 4767-4768 (2012)
- PubMed
- Hira, D., Toh, H., Migita, C.T., Okubo, H., Nishiyama, T., Hattori, M., Furukawa, K. & Fujii, T.
- Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd1.
- FEBS Lett. 586, 1658-1663. (2012)
- PubMed
- Miyauchi, E., Toh, H., Nakano, A., Tanabe, S. & Morita, H.
- Comparative Genomic Analysis of Lactococcus garvieae Strains Isolated from Different Sources Reveals Candidate Virulence Genes.
- Int. J. Microbiol. 728276 (2012)
- PubMed
- Morita, H., Nakano, A., Onoda, H., Toh, H., Oshima, K., Takami, H., Murakami, M., Fukuda, S., Takizawa, T., Kuwahara, T., Ohno, H., Tanabe, S. & Hattori, M.
- Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces.
- Int. J. Syst. Evol. Microbiol. 61, 2610-2615 (2011)
- PubMed
- Toh, H., Sharma, V.K., Oshima, K., Kondo, S., Hattori, M., Ward, B.F., Free, A. & Taylor, T.D.
- Complete genome sequences of Arcobacter butzleri ED-1 and Arcobacter sp. strain L, both isolated from a microbial fuel cell.
- J. Bacteriol. 193, 6411-6412 (2011)
- PubMed
- Morita, H., Toh, H. [co-first author], Oshima, K., Yoshizaki, M., Kawanishi, M., Nakaya, K., Suzuki, T., Miyauchi, E., Ishii, Y., Tanabe, S., Murakami, M., & Hattori, M.
- Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae.
- PLoS One. 6, e23184 (2011)
- PubMed
- Tamakoshi, M., Murakami, A., Sugisawa, M., Tsuneizumi, K., Takeda, S., Saheki, T., Izumi, T., Akiba, T., Mitsuoka, K., Toh, H., Yamashita, A., Arisaka, F., Hattori, M., Oshima, T. & Yamagishi, A.
- Genomic and proteomic characterization of the large Myoviridae bacteriophage ?TMA of the extreme thermophile Thermus thermophilus.
- Bacteriophage. 1, 152-164 (2011)
- PubMed
- Fukuda, S., Toh, H., Hase, K., Oshima, K., Nakanishi, Y., Yoshimura, K., Tobe, T., Clarke, J.M., Topping, D.L., Suzuki, Y., Taylor, T.D., Itoh, K., Kikuchi, J., Morita, H., Hattori, M. & Ohno, H.
- Bifidobacteria can protect from enteropathogenic infection through production of acetate.
- Nature 469, 543-549 (2011)
- PubMed
- Toh, H., Oshima, K., Toyoda, A., Ogura, Y., Ooka, T., Sasamoto, H., Park, S., Iyoda, S., Kurokawa, K., Morita, H., Itoh, K., Taylor, T.D., Hayashi, T. & Hattori, M.
- Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2.
- J. Bacteriol. 192, 1165-1166 (2010)
- PubMed
- Morita, H., Shimazu, M., Shiono, H., Toh, H., Nakajima, F., Akita, H., Takagi, M., Takami, H., Murakami, M., Masaoka, T., Tanabe, S. & Hattori, M.
- Lactobacillus equicursoris sp. nov., isolated from the faeces of a thoroughbred racehorse.
- Int. J. Syst. Evol. Microbiol. 60, 109-112 (2010)
- PubMed
- Morita, H., Toh, H., Oshima, K., Murakami, M., Taylor, T.D., Igimi, S. & Hattori, M.
- Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103.
- J. Bacteriol. 191, 7630-7631 (2009)
- PubMed
- Ogura, Y., Ooka, T., Iguchi, A., Toh, H., Asadulghani, M., Oshima, K., Kodama, T., Abe, H., Nakayama, K., Kurokawa, K., Tobe, T., Hattori, M. & Hayashi, T.
- Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.
- Proc. Natl. Acad. Sci. USA 469, 543-549 (2009)
- PubMed
- Morita, H., Nakano, A., Shimazu, M., Toh, H., Nakajima, F., Nagayama, M., Hisamatsu, S., Kato, Y., Takagi, M., Takami, H., Akita, H., Matsumoto, M., Masaoka, T. & Murakami, M.
- Lactobacillus hayakitensis,L. equigenerosiandL. equi, predominant lactobacilli in the intestinal flora of healthy thoroughbreds.
- Anim. Sci. J. 80, 339-346 (2009)
- PubMed
- Morita, H., Shiratori, C., Murakami, M., Takami, H., Toh, H., Kato, Y., Nakajima, F., Takagi, M., Akita, H., Masaoka, T. & Hattori, M.
- Sharpea azabuensis gen. nov., sp. nov., a Gram-positive, strictly anaerobic bacterium isolated from the faeces of thoroughbred horses.
- Int. J. Syst. Evol. Microbiol. 58, 2682-2686 (2008)
- PubMed
- Hongoh, Y., Sharma, V.K., Prakash, T., Noda, S., Toh, H., Taylor, T.D., Kudo, T., Sakaki, Y., Toyoda, A., Hattori, M. & Ohkuma, M.
- Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.
- Science 322, 1108-1109 (2008)
- PubMed
- Oshima, K., Toh, H., Ogura, Y., Sasamoto, H., Morita, M., Park, S., Ooka, T., Iyoda, S., Taylor, T.D., Hayashi, T., Itoh, K. & Hattori, M.
- Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult.
- DNA Res. 15, 375-386 (2008)
- PubMed
- Morita, H., Toh, H., Fukuda, S., Horikawa, H., Oshima, K., Suzuki, T., Murakami, M., Hisamatsu, S., Kato, Y., Takizawa, T., Fukuoka, H., Yoshimura, T., Itoh, K., O'Sullivan, D.J., McKay, L.L., Ohno, H., Kikuchi, J., Masaoka, T. & Hattori, M.
- Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.
- DNA Res. 15, 151-161 (2008)
- PubMed
- Naito, M., Hirakawa, H., Yamashita, A., Ohara, N., Shoji, M., Yukitake, H., Nakayama, K., Toh, H., Yoshimura, F., Kuhara, S., Hattori, M., Hayashi, T. & Nakayama, K.
- Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis.
- DNA Res. 15, 215-225 (2008)
- PubMed
- Goto, T., Yamashita, A., Hirakawa, H., Matsutani, M., Todo, K., Ohshima, K., Toh, H., Miyamoto, K., Kuhara, S., Hattori, M., Shimizu, T. & Akimoto, S.
- Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen.
- DNA Res. 15, 39-47 (2008)
- PubMed
- Miura, K., Toh, H., Hirakawa, H., Sugii, M., Murata, M., Nakai, K., Tashiro, K., Kuhara, S., Yoshinao Azuma, Y. & Shirai, M.
- Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of Infection.
- DNA Res. 15, 83-91 2008 (2008)
- PubMed
- Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Takami, H., Morita, H., Sharma, V.K., Srivastava, T.P., Taylor, T.D., Noguchi, H., Mori, H., Ogura, Y., Ehrlich, D.S., Itoh, K., Takagi, T., Sakaki, Y., Hayashi, T. & Hattori, M.
- Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.
- DNA Res. 14, 169-181 (2007)
- PubMed
- Nakabachi, A., Yamashita, A., Toh, H., Ishikawa, H., Dunbar, H.E., Moran, N.A. & Hattori, M.
- The 160-kilobase genome of the bacterial endosymbiont Carsonella.
- Science 314, 267-267 (2006)
- PubMed
- Toh, H., Weiss, B.L., Perkin, S.A.H., Yamashita, A., Oshima, K., Hattori, M. & Aksoy, S.
- Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host.
- Genome Res. 16, 149-156 (2006)
- PubMed
- Azuma, Y., Hirakawa, H., Yamashita, A., Cai, Y., Rahman, M.A., Suzuki, H., Mitaku, S., Toh, H., Goto, S., Murakami, T., Sugi, K., Hayashi, H., Fukushi, H., Hattori, M., Kuhara, S. & Shirai, M.
- Genome sequence of the cat pathogen, Chlamydophila felis.
- DNA Res. 13, 15-23 (2006)
- PubMed
- Kuroda, M., Yamashita, A., Hirakawa, H., Kumano, M., Morikawa, K., Higashide, M., Maruyama, A., Inose, Y., Matoba, K., Toh, H., Kuhara, S., Hattori, M. & Ohta, T.
- Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection.
- Proc. Natl. Acad. Sci. USA 102,13272-13277 (2005)
- PubMed
- Kuwahara, T., Yamashita, A., Hirakawa, H., Nakayama, H., Toh, H., Okada, N., Kuhara, S., Hattori, M., Hayashi, T. & Ohnishi, Y.
- Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation.
- Proc. Natl. Acad. Sci. USA 101, 14919-14924 (2004)
- PubMed
- Toh, H., Miura, K., Shirai, M. & Hattori, M.
- In silico inference of inclusion membrane protein family in obligate intracellular parasites chlamydiae.
- DNA Res. 10, 9-17 (2003)
- PubMed
- Nagao, Y., Kitada, S., Kojima, K., Toh, H., Kuhara, S., Ogishima, T. & Ito, A.
- Glycine-rich region of mitochondrial processing peptidase α-subunit is essential for binding and cleavage of the precursor proteins.
- J. Biol. Chem. 275, 34552-34556 (2000)
- PubMed
- Toh, H., Savoie, C.J., Kamikawaji, N., Muta, S., Sasazuki, T. & Kuhara, S.
- Changes at the floor of the peptide-binding groove induce a strong preference for Proline at position 3 of the bound peptide: Molecular dynamics simulations of HLA-A*0217.
- Biopolymers 54, 318-327 (2000)
- PubMed
- Toh, H., Kamikawaji, N., Tana, T., Muta, S., Sasazuki, T. & Kuhara, S.
- Magnitude of structural changes of the T-cell receptor binding regions determine the strength of T-cell antagonism: molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide.
- Protein Eng. Des. Sel. 13, 423-429 (2000)
- PubMed
- Toh, H., Kamikawaji, N., Tana, T., Sasazuki, T. & Kuhara, S.
- Molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide: conformational changes in the putative T-cell receptor binding regions.
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総説 Reviews / 和文 Japanese
- 藤英博, 佐々木裕之
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- 森田 英利, 藤 英博
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著書 Books / 和文 Japanese
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- メタゲノム解析技術の最前線 シーエムシー出版 (2011)
- 森田 英利, 藤 英博
- 乳酸菌・ビフィズス菌のゲノム解析
- 乳酸菌とビフィズス菌のサイエンス 京都大学学術出版会 (2010)
- 藤 英博, 森田 英利, 服部 正平
- メタゲノム解析とその応用
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- 藤 英博, 日本乳酸菌学会
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- 森田 英利, 藤 英博
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- 藤 英博, 服部 正平
- ゲノム解析
- プロバイオティクスとバイオジェニクス エヌ・ティー・エス社 (2007)
- 三浦 公志郎, 藤 英博, 白井 睦訓
- ゲノム解析
- クラミジア・ニューモニエの細菌学的特徴 〜ゲノム解析からわかったこと〜 医薬ジャーナル社 (2002)
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